A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-10-25, 22:58 UTC
based on data in:
/home/ec2-user/SageMaker/NIGMS-Sandbox-Repository-MeRIP-UH/Tutorial_1/STAR
General Statistics
Showing 0/26 rows and 2/6 columns.
| Sample Name | Total reads | Aligned | Aligned | Uniq aligned | Uniq aligned | Multimapped |
|---|---|---|---|---|---|---|
| subset_SRR7763558 | 0.0M | 0.0M | 99.5% | 0.0M | 92.8% | 0.0M |
| subset_SRR7763559 | 0.0M | 0.0M | 99.6% | 0.0M | 93.8% | 0.0M |
| subset_SRR7763560 | 0.0M | 0.0M | 99.7% | 0.0M | 94.5% | 0.0M |
| subset_SRR7763561 | 0.0M | 0.0M | 99.7% | 0.0M | 94.8% | 0.0M |
| subset_SRR7763562 | 0.0M | 0.0M | 99.5% | 0.0M | 92.7% | 0.0M |
| subset_SRR7763563 | 0.0M | 0.0M | 99.7% | 0.0M | 93.8% | 0.0M |
| subset_SRR7763564 | 0.0M | 0.0M | 99.6% | 0.0M | 91.8% | 0.0M |
| subset_SRR7763565 | 0.0M | 0.0M | 99.7% | 0.0M | 93.5% | 0.0M |
| subset_SRR7763566 | 0.0M | 0.0M | 99.6% | 0.0M | 94.0% | 0.0M |
| subset_SRR7763567 | 0.0M | 0.0M | 99.7% | 0.0M | 93.8% | 0.0M |
| subset_SRR7763568 | 0.0M | 0.0M | 99.6% | 0.0M | 93.5% | 0.0M |
| subset_SRR7763569 | 0.0M | 0.0M | 99.7% | 0.0M | 93.0% | 0.0M |
| subset_SRR7763570 | 0.0M | 0.0M | 99.6% | 0.0M | 93.7% | 0.0M |
| subset_SRR7763571 | 0.0M | 0.0M | 99.7% | 0.0M | 93.4% | 0.0M |
| subset_SRR7763572 | 0.1M | 0.1M | 99.6% | 0.1M | 94.0% | 0.0M |
| subset_SRR7763573 | 0.1M | 0.1M | 99.6% | 0.1M | 93.1% | 0.0M |
| subset_SRR7763574 | 0.0M | 0.0M | 99.7% | 0.0M | 94.0% | 0.0M |
| subset_SRR7763575 | 0.0M | 0.0M | 99.4% | 0.0M | 90.2% | 0.0M |
| subset_SRR7763576 | 0.0M | 0.0M | 99.6% | 0.0M | 93.1% | 0.0M |
| subset_SRR7763577 | 0.0M | 0.0M | 99.3% | 0.0M | 89.3% | 0.0M |
| subset_SRR7763578 | 0.0M | 0.0M | 99.7% | 0.0M | 93.1% | 0.0M |
| subset_SRR7763579 | 0.0M | 0.0M | 99.7% | 0.0M | 94.3% | 0.0M |
| subset_SRR7763580 | 0.0M | 0.0M | 99.7% | 0.0M | 94.5% | 0.0M |
| subset_SRR7763581 | 0.0M | 0.0M | 99.5% | 0.0M | 92.6% | 0.0M |
| subset_SRR7763582 | 0.0M | 0.0M | 99.5% | 0.0M | 91.7% | 0.0M |
| subset_SRR7763583 | 0.0M | 0.0M | 99.6% | 0.0M | 93.2% | 0.0M |
STAR
Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635
Summary Statistics
Summary statistics from the STAR alignment
Showing 0/26 rows and 10/19 columns.
| Sample Name | Total reads | Aligned | Aligned | Uniq aligned | Uniq aligned | Multimapped | Avg. read len | Avg. mapped len | Splices | Annotated splices | GT/AG splices | GC/AG splices | AT/AC splices | Non-canonical splices | Mismatch rate | Del rate | Del len | Ins rate | Ins len |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| subset_SRR7763558 | 0.0M | 0.0M | 99.5% | 0.0M | 92.8% | 0.0M | 72.0bp | 69.0bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.1bp |
| subset_SRR7763559 | 0.0M | 0.0M | 99.6% | 0.0M | 93.8% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.6bp | 0.0% | 1.0bp |
| subset_SRR7763560 | 0.0M | 0.0M | 99.7% | 0.0M | 94.5% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.1bp |
| subset_SRR7763561 | 0.0M | 0.0M | 99.7% | 0.0M | 94.8% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.9% | 0.0% | 1.4bp | 0.0% | 1.0bp |
| subset_SRR7763562 | 0.0M | 0.0M | 99.5% | 0.0M | 92.7% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.4bp | 0.0% | 1.1bp |
| subset_SRR7763563 | 0.0M | 0.0M | 99.7% | 0.0M | 93.8% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.0bp |
| subset_SRR7763564 | 0.0M | 0.0M | 99.6% | 0.0M | 91.8% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.2bp | 0.0% | 1.1bp |
| subset_SRR7763565 | 0.0M | 0.0M | 99.7% | 0.0M | 93.5% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.9% | 0.0% | 1.4bp | 0.0% | 1.1bp |
| subset_SRR7763566 | 0.0M | 0.0M | 99.6% | 0.0M | 94.0% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.9% | 0.0% | 1.4bp | 0.0% | 1.0bp |
| subset_SRR7763567 | 0.0M | 0.0M | 99.7% | 0.0M | 93.8% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.6bp | 0.0% | 1.0bp |
| subset_SRR7763568 | 0.0M | 0.0M | 99.6% | 0.0M | 93.5% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.4bp | 0.0% | 1.0bp |
| subset_SRR7763569 | 0.0M | 0.0M | 99.7% | 0.0M | 93.0% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.4bp | 0.0% | 1.0bp |
| subset_SRR7763570 | 0.0M | 0.0M | 99.6% | 0.0M | 93.7% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.9% | 0.0% | 1.4bp | 0.0% | 1.0bp |
| subset_SRR7763571 | 0.0M | 0.0M | 99.7% | 0.0M | 93.4% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.1% | 0.1% | 1.9bp | 0.0% | 1.1bp |
| subset_SRR7763572 | 0.1M | 0.1M | 99.6% | 0.1M | 94.0% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.0bp |
| subset_SRR7763573 | 0.1M | 0.1M | 99.6% | 0.1M | 93.1% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.1% | 0.0% | 1.4bp | 0.0% | 1.0bp |
| subset_SRR7763574 | 0.0M | 0.0M | 99.7% | 0.0M | 94.0% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.1bp |
| subset_SRR7763575 | 0.0M | 0.0M | 99.4% | 0.0M | 90.2% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.0bp |
| subset_SRR7763576 | 0.0M | 0.0M | 99.6% | 0.0M | 93.1% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.1% | 0.0% | 1.5bp | 0.0% | 1.0bp |
| subset_SRR7763577 | 0.0M | 0.0M | 99.3% | 0.0M | 89.3% | 0.0M | 72.0bp | 69.0bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.8bp | 0.0% | 1.1bp |
| subset_SRR7763578 | 0.0M | 0.0M | 99.7% | 0.0M | 93.1% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.7bp | 0.0% | 1.1bp |
| subset_SRR7763579 | 0.0M | 0.0M | 99.7% | 0.0M | 94.3% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.9% | 0.0% | 1.3bp | 0.0% | 1.0bp |
| subset_SRR7763580 | 0.0M | 0.0M | 99.7% | 0.0M | 94.5% | 0.0M | 72.0bp | 69.3bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.5bp | 0.0% | 1.1bp |
| subset_SRR7763581 | 0.0M | 0.0M | 99.5% | 0.0M | 92.6% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.7bp | 0.0% | 1.0bp |
| subset_SRR7763582 | 0.0M | 0.0M | 99.5% | 0.0M | 91.7% | 0.0M | 72.0bp | 69.1bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.6bp | 0.0% | 1.0bp |
| subset_SRR7763583 | 0.0M | 0.0M | 99.6% | 0.0M | 93.2% | 0.0M | 72.0bp | 69.2bp | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 0.0M | 1.0% | 0.0% | 1.6bp | 0.0% | 1.0bp |
Alignment Scores
Gene Counts
Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.
