Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.


        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.


        Load Settings

        Choose a saved report profile from the dropdown box below:

        Tool Citations

        Please remember to cite the tools that you use in your analysis.

        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.25.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-10-25, 22:58 UTC based on data in: /home/ec2-user/SageMaker/NIGMS-Sandbox-Repository-MeRIP-UH/Tutorial_1/STAR


        General Statistics

        Showing 0/26 rows and 2/6 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimapped
        subset_SRR7763558
        0.0M
        0.0M
        99.5%
        0.0M
        92.8%
        0.0M
        subset_SRR7763559
        0.0M
        0.0M
        99.6%
        0.0M
        93.8%
        0.0M
        subset_SRR7763560
        0.0M
        0.0M
        99.7%
        0.0M
        94.5%
        0.0M
        subset_SRR7763561
        0.0M
        0.0M
        99.7%
        0.0M
        94.8%
        0.0M
        subset_SRR7763562
        0.0M
        0.0M
        99.5%
        0.0M
        92.7%
        0.0M
        subset_SRR7763563
        0.0M
        0.0M
        99.7%
        0.0M
        93.8%
        0.0M
        subset_SRR7763564
        0.0M
        0.0M
        99.6%
        0.0M
        91.8%
        0.0M
        subset_SRR7763565
        0.0M
        0.0M
        99.7%
        0.0M
        93.5%
        0.0M
        subset_SRR7763566
        0.0M
        0.0M
        99.6%
        0.0M
        94.0%
        0.0M
        subset_SRR7763567
        0.0M
        0.0M
        99.7%
        0.0M
        93.8%
        0.0M
        subset_SRR7763568
        0.0M
        0.0M
        99.6%
        0.0M
        93.5%
        0.0M
        subset_SRR7763569
        0.0M
        0.0M
        99.7%
        0.0M
        93.0%
        0.0M
        subset_SRR7763570
        0.0M
        0.0M
        99.6%
        0.0M
        93.7%
        0.0M
        subset_SRR7763571
        0.0M
        0.0M
        99.7%
        0.0M
        93.4%
        0.0M
        subset_SRR7763572
        0.1M
        0.1M
        99.6%
        0.1M
        94.0%
        0.0M
        subset_SRR7763573
        0.1M
        0.1M
        99.6%
        0.1M
        93.1%
        0.0M
        subset_SRR7763574
        0.0M
        0.0M
        99.7%
        0.0M
        94.0%
        0.0M
        subset_SRR7763575
        0.0M
        0.0M
        99.4%
        0.0M
        90.2%
        0.0M
        subset_SRR7763576
        0.0M
        0.0M
        99.6%
        0.0M
        93.1%
        0.0M
        subset_SRR7763577
        0.0M
        0.0M
        99.3%
        0.0M
        89.3%
        0.0M
        subset_SRR7763578
        0.0M
        0.0M
        99.7%
        0.0M
        93.1%
        0.0M
        subset_SRR7763579
        0.0M
        0.0M
        99.7%
        0.0M
        94.3%
        0.0M
        subset_SRR7763580
        0.0M
        0.0M
        99.7%
        0.0M
        94.5%
        0.0M
        subset_SRR7763581
        0.0M
        0.0M
        99.5%
        0.0M
        92.6%
        0.0M
        subset_SRR7763582
        0.0M
        0.0M
        99.5%
        0.0M
        91.7%
        0.0M
        subset_SRR7763583
        0.0M
        0.0M
        99.6%
        0.0M
        93.2%
        0.0M

        STAR

        Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

        Summary Statistics

        Summary statistics from the STAR alignment

        Showing 0/26 rows and 10/19 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimappedAvg. read lenAvg. mapped lenSplicesAnnotated splicesGT/AG splicesGC/AG splicesAT/AC splicesNon-canonical splicesMismatch rateDel rateDel lenIns rateIns len
        subset_SRR7763558
        0.0M
        0.0M
        99.5%
        0.0M
        92.8%
        0.0M
        72.0bp
        69.0bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.1bp
        subset_SRR7763559
        0.0M
        0.0M
        99.6%
        0.0M
        93.8%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.6bp
        0.0%
        1.0bp
        subset_SRR7763560
        0.0M
        0.0M
        99.7%
        0.0M
        94.5%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.1bp
        subset_SRR7763561
        0.0M
        0.0M
        99.7%
        0.0M
        94.8%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.9%
        0.0%
        1.4bp
        0.0%
        1.0bp
        subset_SRR7763562
        0.0M
        0.0M
        99.5%
        0.0M
        92.7%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.4bp
        0.0%
        1.1bp
        subset_SRR7763563
        0.0M
        0.0M
        99.7%
        0.0M
        93.8%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.0bp
        subset_SRR7763564
        0.0M
        0.0M
        99.6%
        0.0M
        91.8%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.2bp
        0.0%
        1.1bp
        subset_SRR7763565
        0.0M
        0.0M
        99.7%
        0.0M
        93.5%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.9%
        0.0%
        1.4bp
        0.0%
        1.1bp
        subset_SRR7763566
        0.0M
        0.0M
        99.6%
        0.0M
        94.0%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.9%
        0.0%
        1.4bp
        0.0%
        1.0bp
        subset_SRR7763567
        0.0M
        0.0M
        99.7%
        0.0M
        93.8%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.6bp
        0.0%
        1.0bp
        subset_SRR7763568
        0.0M
        0.0M
        99.6%
        0.0M
        93.5%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.4bp
        0.0%
        1.0bp
        subset_SRR7763569
        0.0M
        0.0M
        99.7%
        0.0M
        93.0%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.4bp
        0.0%
        1.0bp
        subset_SRR7763570
        0.0M
        0.0M
        99.6%
        0.0M
        93.7%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.9%
        0.0%
        1.4bp
        0.0%
        1.0bp
        subset_SRR7763571
        0.0M
        0.0M
        99.7%
        0.0M
        93.4%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.1%
        0.1%
        1.9bp
        0.0%
        1.1bp
        subset_SRR7763572
        0.1M
        0.1M
        99.6%
        0.1M
        94.0%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.0bp
        subset_SRR7763573
        0.1M
        0.1M
        99.6%
        0.1M
        93.1%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.1%
        0.0%
        1.4bp
        0.0%
        1.0bp
        subset_SRR7763574
        0.0M
        0.0M
        99.7%
        0.0M
        94.0%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.1bp
        subset_SRR7763575
        0.0M
        0.0M
        99.4%
        0.0M
        90.2%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.0bp
        subset_SRR7763576
        0.0M
        0.0M
        99.6%
        0.0M
        93.1%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.1%
        0.0%
        1.5bp
        0.0%
        1.0bp
        subset_SRR7763577
        0.0M
        0.0M
        99.3%
        0.0M
        89.3%
        0.0M
        72.0bp
        69.0bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.8bp
        0.0%
        1.1bp
        subset_SRR7763578
        0.0M
        0.0M
        99.7%
        0.0M
        93.1%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.7bp
        0.0%
        1.1bp
        subset_SRR7763579
        0.0M
        0.0M
        99.7%
        0.0M
        94.3%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.9%
        0.0%
        1.3bp
        0.0%
        1.0bp
        subset_SRR7763580
        0.0M
        0.0M
        99.7%
        0.0M
        94.5%
        0.0M
        72.0bp
        69.3bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.5bp
        0.0%
        1.1bp
        subset_SRR7763581
        0.0M
        0.0M
        99.5%
        0.0M
        92.6%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.7bp
        0.0%
        1.0bp
        subset_SRR7763582
        0.0M
        0.0M
        99.5%
        0.0M
        91.7%
        0.0M
        72.0bp
        69.1bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.6bp
        0.0%
        1.0bp
        subset_SRR7763583
        0.0M
        0.0M
        99.6%
        0.0M
        93.2%
        0.0M
        72.0bp
        69.2bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.6bp
        0.0%
        1.0bp

        Alignment Scores

        Created with MultiQC

        Gene Counts

        Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.

        Created with MultiQC